Jira Integration

Last updated: April 28, 2026

Overview

Span integrates with Jira to sync issue, sprint, project, and workflow data, powering engineering metrics including cycle time, sprint health, DORA metrics, and work allocation analysis. Both Jira Cloud and Jira Server / Data Center are supported.

Span automatically detects your Jira type: domains ending in .atlassian.net are treated as Jira Cloud; all other domains are treated as Jira Server / Data Center.

Before You Begin

You will need: 

  • Admin access to Span (or the Integrations Admin role)

  • A Jira user account with read access to all projects you want Span to analyze

  • Jira API token (not your Jira password)

  • Your Jira domain (e.g. yourcompany.atlassian.net or jira.yourcompany.com)

Setup

Step 1 — Generate a Jira API Token

  1. Go to Atlassian Account Settings → Security → API Tokens

  2. Click Create API token, give it a descriptive label (e.g. Span Integration), and copy the token value

  3. Save it somewhere safe — Atlassian will not show it again

Your Jira password cannot be used in place of an API token.


Step 2 — Connect Jira to Span

  1. In Span, go to Settings → Tools & Integrations

  2. Select Jira

  3. Enter your credentials:

Field

What to enter

Jira Domain

Your domain without https:// — e.g. yourcompany.atlassian.net

Email

The email address associated with your Jira account

API Token

The token generated in Step 1

  1. Click Validate & Continue. Span verifies the connection before proceeding.

If validation fails, you'll see one of the following messages:

Error

Likely cause

"Failed to authenticate. Please check your api token."

Incorrect email/token, or token has been revoked

"Please verify your Jira domain."

Domain is wrong or unreachable

"Authentication failed. Please check your credentials and domain."

General credential or domain mismatch

"Connection failed. Please check your network connection and try again."

Span could not reach your Jira instance

Step 3 — Configure Custom Fields

After validation, Span fetches your Jira instance's field definitions and auto-detects common fields. You'll configure three areas: 

Story Points

Span auto-detects and enables these standard fields when present:

  • Story Points — used by Next Gen / Team-managed projects

  • Story point estimate — used by Classic / Company-managed projects

If detected, they appear pre-selected and cannot be deselected. If your team uses a custom field for story points, you can select one additional custom field from a dropdown. If no story point fields are found, you can continue without configuring them.

Pull Request Linking

Choose how Span links pull requests to Jira issues:

Method

Notes

Jira's Native Method: Development (default)

Uses Jira's built-in development integration field

Remote Links

Uses Jira's remote links API — contact Span support to enable

GitKraken Integration

Jira Data Center only — contact Span support to enable

Issue Categorization

Select up to 10 custom fields for categorizing issues. These fields power DORA metrics, investment mix analysis, and work type classification. Search by field name or field ID.

Auto-Detected System Fields

If Span finds your Sprint or Epic fields, they are automatically included in the summary. Note: Epic field auto-detection is available on Jira Data Center only — on Jira Cloud, configure it manually as a custom field if needed.

  1. Click Create Integration to complete setup.

What Data Span Syncs

No webhooks need to be configured on the Jira side. Span pulls data on a scheduled basis: 

Data

Sync Method

Availability

Issues

Incremental with deduplication

Cloud & Data Center

Issue change history

Incremental

Jira Cloud only

Pull requests (PR–issue links)

Incremental

Cloud & Data Center

Sprints

Full refresh

Cloud & Data Center

Projects

Full refresh

Cloud & Data Center

Boards

Full refresh

Cloud & Data Center

Users

Full refresh

Cloud & Data Center

Workflow statuses

Full refresh

Cloud & Data Center

Only the custom fields you configured during setup are synced.

Historical data: New organizations sync 6 months of historical data by default, unless configured otherwise in your organization settings.

Metrics & Features Powered by Jira

With the Jira integration active, Span enables:

  • Issue lifecycle metrics — cycle time, lead time, time in status

  • Sprint metrics — planning accuracy, estimation accuracy, burndown analysis

  • Issue completion — issues completed per week, broken down by type (Story, Bug, Task, Sub-task)

  • DORA metrics — change failure rate and deployment frequency (correlated with Jira work items)

  • Work allocation — investment mix and capacity analysis via custom field categories

  • PR traceability — pull requests linked to the Jira issues they address

  • Team capacity — FTE days and cost allocation based on issue assignment

Jira Cloud vs. Server / Data Center

Feature

Jira Cloud

Jira Server / Data Center

Issue change history sync

Epic field auto-detection

GitKraken PR linking

(contact support)

Security & Permissions

  • Authentication method: Email + API token (no OAuth flow required)

  • Required Jira permissions: Read access to all projects you want analyzed

  • API token storage: Tokens are encrypted at rest — never stored as plain text

  • Span role required: Admin or Integrations Admin


Troubleshooting

Symptom

Resolution

Development field not auto-detected

A manual dropdown will appear during setup — select the correct field there

Story point fields not detected

Span matches by exact field name. Use the custom story point field dropdown to select manually

PR linking not working after setup

Confirm Jira's Development field is populated on your issues. For Remote Links or GitKraken, contact support

Integration stops syncing

Your API token may have been rotated or revoked. Generate a new token and update credentials in Settings → Tools & Integrations → Jira

Epic field not detected (Jira Cloud)

Auto-detection is Data Center only. On Cloud, add the Epic field manually as a custom categorization field

Issue change history unavailable

Change history sync is only available on Jira Cloud. Data Center users cannot access field-level history